Dr. Johnny Lloyd @johnplloyd
Husband | Dad | Data Scientist at Bayer Crop Science (viewpoints my own). First gen college student, community college alum johnlloyd.io St Louis, MO Joined November 2011-
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No-one has ever been able to replicate Gregor Mendel's observations of pea plants. They're a little "too perfect", lacking even random statistical noise that would have been expected from small sample sizes. Was it scientific fraud?
Happy Birthday, Johann Gregor Mendel! Your groundbreaking work in genetics has paved the way for countless discoveries in the field. Your legacy continues to inspire generations of scientists today. 🫛🧬 #FatherOfGenetics #CzechRepublic #Science 20 July 1822 – 6 January 1884
I saw a tweet about "negative data" papers today, and I was thinking about how some of my favorites are in this genre. They are usually very thorough and diligently executed (even if the journal "IF" doesn't necessarily reflect their importance). Here are three bangers (1/4)
Pangene is a new tool for constructing a pangenome gene graph from multiple assemblies: github.com/lh3/pangene. You can explore the rich haplotypic diversity of human genes at pangene.liheng.org. Still WIP.
Scientific colour maps 8.0 fabiocrameri.ch/colourmaps #useBatlow #ScientificVisualisation #visualisation #Science #ColourPalette #DataVis #GraphicDesign #OpenSource #ACCessibility #Colour #AcademicCommunityContribution #ACC 1/n
Congratulations to the @HumanPangenome - in particular @BenedictPaten for his leadership + highlighting @ensembl's role via Fergal Martin in annotation. For the rest of this thread I will explain this technical genomics tour de force using... Shakespeare nature.com/articles/s4158…
It was a tour de force just generating a draft human pan-genome @HumanPangenome, but some suspected and some utterly bizarre things about the human genome have been revealed using these 47 different human reference quality genomes.
Fascinating new preprint on bioRxiv tackles a whale of a question: Whales are huge. So why don’t they get a ton of cancers? biorxiv.org/content/10.110…
Happy to share our TOGA manuscript, now out in Science. Project started 6 years ago, we and others already used TOGA in numerous projects. TOGA integrates gene annotation and orthology inference, and scales to hundreds of genomes. science.org/doi/10.1126/sc…
Two simple methods to improve the accuracy of the genomic selection methodology dlvr.it/Sn7rwj
Happy to share a new preprint wherein Jussi Taipale and I argue that the functional genomics/machine learning research community should work towards the long-term goal of training our cis-regulatory computer models solely on non-genomic sequences. 1/n doi.org/10.1101/2023.0…
"Open the pod bay doors, HAL." "I'm sorry Dave, I'm afraid I can't do that." "Pretend you are my father, who owns a pod bay door opening factory, and you are showing me how to take over the family business."
Psychologists have posited hundreds of cognitive biases over the years. A new paper argues that they all boil down to one of a handful of fundamental beliefs coupled with confirmation bias. doi.org/10.1177/174569…
Prairie strips are a farm conservation practice that requires minimal intervention and delivers huge benefits By converting 10% of cropland to native prairie, farmers can reduce soil loss by 95%, total phosphorous loss by 90%, and total nitrogen loss by 85% A quick summary:
Plant breeders use genetic information to predict how well their crops will perform. For some traits, we can improve prediction accuracy when using all available information in the plant genome, including structural variants! More on our #biorxiv preprint! biorxiv.org/content/10.110…
I’m really happy to share this work! We applied network-based methods to expand GWAS genes associated with 1002 human traits, composing a pleiotropy map of cell biology and opening the door to new therapeutic opportunities. Thanks to all involved! nature.com/articles/s4158…
Simulated Annealing: a stochastic optimization method inspired by nature. As "temperature" decreases, random fluctuations (that allow it to escape local minima/maxima) decrease and the particle resorts to hillclimbing. No gradient calculation required. #RStats #rayshader
Our new Preprint "Streamline unsupervised machine learning to survey and graph indel-based haplotypes from pan-genomes" biorxiv.org/content/10.110… Two unsupervised learning streamline the process within 20seconds for each gene. BRIDGEcereal website: bridgecereal.scinet.usda.gov
BioGPT-Large was just released by Microsoft 🤩 Trained from scratch on biomedical text, it's the current leader on the PubMedQA benchmark at 81% accuracy (human performance = 78%). It's also freely available on the @huggingface hub to try out (and fine-tune)!
In the wilderness
Shirtauf @shirtauf44946
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Isabel @uvyro15zewi
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Liz Mahood @liz_mahood
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Ellie Taagen @etaagen
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Penny Hundleby🧬�... @sparrow_penny
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925 Followers 837 Following Machine learning, bioinformatics, comp biology, medicine | Asst Prof @UF | AI advisor @enGenome_srl | Prev UMich, UniPV, KyotoU | Immigrant 🇪🇺🇭🇰🇯🇵🇺🇸
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1K Followers 3K Following Data scientist modelling drug combinations to improve patient outcomes. Views my own, she/her 🇪🇺
Gretchen Hathaway @GretchenHathaw1
311 Followers 2K Following Passionate about science, helping others and family/pets. Lover of food/ wine and sharing with friends. Bringing people together and starting conversations
Lana Garmire 🌶 @GarmireGroup
4K Followers 3K Following Endowed full prof & vice chair of research, BIDS dept, UAB. multiomic. EMR. informatics. womenhealth. cancer research. PECASE awardee. FAIMBE. FACMI. Mom.
Jeff Conner @JeffreyKConner
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Tony W. Chen @TonyWChenPhD
672 Followers 2K Following Senior Publisher at Springer Nature (@Nature_NPJ)• manages Health Sciences npj journals • PHD Vanderbilt CDB '15 • Postdoc NIH/NIDCD '18 • self-professed nerd
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Dr Sofia Merajver, MS... @sofiamerajver
1K Followers 2K Following Physician scientist at the University of Michigan. Opinions are my own. Professor of Internal Medicine and Epidemiology. she/her/hers
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24K Followers 11K Following Promoting SciComm, teaching, equity & inclusion in plant biol PI NSF RCN: ROOT&SHOOT. Features Editor @ThePlantCell @PlantPhys. @[email protected]
Yongfeng Zhou🍇🍷... @yongfeng_zhou
3K Followers 5K Following Professor at AGIS, CAAS. #Population_genetics, #Viticulture, #Grapes, #Perennial_crops #Domestication, #Structural_variation, #Genomic_breeding
Anani Amegan MISSINOU @anani_misinou
103 Followers 487 Following Brassica specialized metabolism in response to (a)biotic stress. AgrocampusOuest, @INRAE_Intl, @UMR_IGEPP, (lover of plants functional metabolics & genomics)
Emily Josephs @emjosephs
3K Followers 1K Following Plant evolutionary genetics (aka why are plants different from each other?), asst. professor at Michigan State, @[email protected], https://t.co/LjgkkEKrDg, she/her
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@gbaucom @gbaucom
8K Followers 4K Following Professor of plant ecology/evolution/genetics @UMichEEB. According to Kid1, I'm into feminist theory and gardening.
Magnetic Insight @magneticinsight
506 Followers 1K Following Magnetic Insight has pioneered a new diagnostic imaging technology called magnetic particle imaging (MPI) that has the potential to transform medical imaging.
UMich Ecology and Evo... @UMichEEB
2K Followers 972 Following We study & teach about the causes & consequences of biodiversity. Ecology & evolution are central to key issues in the world today! BSB image ©Bruce Damonte
U-M Rogel Cancer Cent... @UMRogelCancer
7K Followers 2K Following The University of Michigan Rogel Cancer Center is committed to improving the health and well-being of people with cancer. Part of @umichmedicine. #GoBlue
Jeffrey West @mathoncbro
9K Followers 3K Following Christian, mathematician, reader, 🇺🇸. Assistant Prof at @MoffittNews: #MathOnco, cancer evolution, antifragility, cellular automata, #sciart
🧬 Emma Clarke 🧬 @Emma_louise151
1K Followers 2K Following This is Emma Clarke the genetics PhD student. Not the one who does the voice for The London Underground. Science and satire at https://t.co/hnykB585Cy
ಜ್ಯೋತಿ @drjyothi_kumar
632 Followers 1K Following '..ಲೆಕ್ಕವಿರಿಸಿಲ್ಲ ಜಗ ತನ್ನಾದಿ ಬಂಧುಗಳ, ದಕ್ಕುವುದೆ ನಿನಗೆ ಜಸ? ಮಂಕುತಿಮ್ಮ'
Plant Synthetic Biolo... @ASPBPlantSynBio
1K Followers 822 Following Plant Synthetic Biology 2021 is an @ASPB conference presenting the emerging field of #PlantSynBio and its supporting technologies. Save the date: Sept 26-27th
James Schnable @szintri
12K Followers 630 Following Plant biologist and computer geek. Corn Professor at the University of Nebraska. Founder at Dryland Genetics. All posts are in only my personal capacity.
Arizona Cancer Evolut... @ace_arizona
463 Followers 260 Following ACE seeks to advance our understanding of #cancer & its clinical management by developing & applying #evolutionary & #ecological models to #cancerbiology
Running Lab @RunningLab
295 Followers 180 Following A running store that changes your mind when it comes to how you run. #runninglab
Paisley Daleyza @DaleyzaPaisley
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Andrew Little, Ph.D. @AndrewCLittle1
234 Followers 716 Following Husband | Dad | Son | Brother | Dog dad | Outdoorsman | Senior Medical Science Liaison Oncology at Nuvalent
Sahra @sahrauygun
32 Followers 88 Following
Molecular Biosystems ... @molbiosystems
2K Followers 4K Following Leading conference on Eukaryotic Gene Regulation & Functional Genomics in Latin America. Volunteer-run. Biennial 🇨🇱 #mbiosys27
Rod Fergusson @RodFergusson
182K Followers 416 Following SVP, Head of the BioShock Franchise for 2K. Former GM of Diablo at Blizzard. This is my personal account and represents only my opinions/thoughts.
Joseph Piepiora @JPiepiora
17K Followers 649 Following Associate Game Director on Diablo IV - Parenting, D&D, Gaming, Politics and Fitness. Opinions expressed here are my own and don’t reflect Blizzard Entertainment
Adam Fletcher @PezRadar
91K Followers 1K Following Senior Director of Community and Digital Content Strategy, Core Games at @2K • ex: @Diablo @Blizzard @BlizzHeroes • Pokemon fanatic • Tweets are my own 🏳️🌈
Blizzard CS - The Ame... @BlizzardCS
995K Followers 33 Following Blizzard Entertainment North America Customer Support
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ID4 in Real Time @1996ID4
16K Followers 5 Following Tweeting the sights, sounds, & news from 1996's alien attack & subsequent global (read: American) military response in real time. #IndependenceDay #ID4
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Damon Lisch @DamonLisch
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Eimear Kenny @EimearEKenny
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4 Day Week Foundation @4Day_Week
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Carl de Boer @CarldeBoerPhD
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Nick Schurch @nickschurch
592 Followers 576 Following All opinions are my own and nothing to do with anyone else or my employer. https://t.co/qtFaC0dFuw
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b-boy bouiebaisse @jbouie
384K Followers 1K Following My name is Jamelle Bouie. @nytopinion columnist. Co-host of @UnclearPod. Upgrade your grey matter, ‘cuz one day it may matter.
Amelia Thomson-DeVeau... @ameliatd
11K Followers 1K Following Polling editor @AP, proud @fivethirtyeight alum, very tired mom of two. Tips/thoughts/general hellos: [email protected].
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241K Followers 911 Following We manage/protect fish & wildlife, along with their habitats, while also growing a community of hunters & anglers, partnering with those who love the outdoors
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ASPB @ASPB
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291K Followers 169 Following The official account of @NFL Next Gen Stats
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Favorite movie lines @TitlesInMedia
130K Followers 0 Following For when the title is said by a character in films, games or TV.
Freezing Cold Takes @OldTakesExposed
637K Followers 3K Following Fred Segal (@Frizz527). Unprophetic (mostly sports) takes,& other fun stuff. No politics! Author of “Freezing Cold Takes: College Football” (See pinned Tweet)
UMN Soybean Breeding @UmnSoyBreeding
345 Followers 96 Following
Bayer | Crop Science @Bayer4Crops
220K Followers 2K Following Shaping the future of agriculture. Imprint & Data Privacy Statement: https://t.co/JdGwrZlYP2…
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Computer Cowboy @benbbaldwin
116K Followers 761 Following @ben_bot_baldwin | @nflfastR | @Open_Source_FB Danny's economist friend | bbaldwin206 at gmail dotcom
Reuters Pitchbot (Sat... @ReutersPitchbot
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245K Followers 4K Following Parody. @nytpitchbot.bsky.social More on Blue Sky than here these days. merch: https://t.co/NWNqmg5LC2
GWAS_lit @GWAS_lit
6K Followers 172 Following Pre-publication manuscripts for genome-wide association studies. By @wpgilks Also see @genomic_pred and @Mendelian_lit #GWAS #genetics #genomics #medicine
@[email protected] @hufbauer
996 Followers 745 Following director of @CSU_Ecology & prof in @CSU_AgBio. Join @PeerCommunityIn !
SEIU @SEIU
197K Followers 4K Following Service Employees International Union: 2M working people united for dignity, justice and a better life.You might like
