🤝 And there’s more! Thanks to this integration, you can also tap into the 🦒 BioImage Model Zoo 🧬.
Pretrained models can now be run straight through Galaxy with BiaPy, bringing community AI models to your data in just a few clicks.
#BioImageModelZoo#OpenScience
🚀 Excited to share that our work on BiaPy has been published today in Nature Methods!
BiaPy makes deep learning accessible for bioimage analysis, from small datasets to terabyte-scale 3D images. 👇(1/7)
🔗 nature.com/articles/s4159…#DeepLearning#BioimageAnalysis#BiaPy
and 4⃣, on Friday at 10:45am (Sala Toledo), I will be presenting the history and current state of @BiaPyX with my talk "BiaPy: Bioimage Analysis workflows for all audiences", see you all there! 😊
The SPAOM 2024 Community Workshops are here! 🚀 Join us for hands-on sessions with experts, cutting-edge techniques, and the latest in optical microscopy and imaging. 🔬
🔗 Learn more and register: SPAOM2024.org
Don't miss out on this incredible opportunity #SPAOM2024
BiaPy ⛴️ will be at SPAOM24 in Toledo twice! We'll lead a community workshop (Day 2) and @IgnacioArganda will give an invited talk (Day 3) about our library and application ☺️ See you all there! #SPAOM2024
🆕 We have updated our preprint in @biorxivpreprint 📰 It explains better the current state of #BiaPy ⛴️ while describing as well its limitations 🤗 Hope you like it!
"BiaPy: Accessible deep learning on bioimages" biorxiv.org/content/10.110…
🚀 For a fast overview on how to reuse models from the @bioimageio zoo 🦒in our notebooks 📒 (including exporting them too), check our video
"BiaPy: Import & Export BioImage Model Zoo models in Notebooks" youtu.be/R0Li3tZ7Ryc?si… via @YouTube by @IgnacioArganda
3⃣ and of course, programmatically 🤓 by editing the YAML configuration file.
We have a dedicated page in the documentation 📚 that explains the whole process in all three cases:
biapy.readthedocs.io/en/latest/get_…
2⃣ from the notebooks, by listing 📒 all available models compatible with your task, then selecting the 🦒 zoo as model source, and finally introducing the nickname of the model that best fits your needs:
Would you like to use a model from the @bioimageio zoo 🦒 as core model of your BiaPy ⛴️ workflow? No worries! You can easily do that either 👇
1⃣ from the GUI 🖥️, specially if you follow the instructions of our friendly wizard 🪄🧙♀️
📒 Our code-free notebooks are designed to be self-explainable and (hopefully 🤞) easy to use and follow. Nevertheless, in case you feel overwhelmed by them, you can have a look at our walkthrough video on BiaPy Notebooks youtu.be/KEqfio-EnYw?si… via @YouTube by @IgnacioArganda
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