Bioinformatics TC @BioTestConsort
The Bioinformatics Testing Consortium was established to promote high quality coding standards in bioinformatics pipelines. github.com/BioTest/core Joined May 2012-
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@cjfields Hadn’t realised the link was unchanged on the Twitter account. Should be changed now, thanks!
@cjfields I ended up moving it to Github -seemed like the right fit, given the aims :) github.com/BioTest/core
If you do/teach bioinformatics (or want to) and haven't checked out @ProjectRosalind, you should. rosalind.info
Very proud to witness @bentemperton and his ingenuity today. The man wanted a standing desk. #deskonbricks
Automated classification of tailed bacteriophages according to their neck organization biomedcentral.com/1471-2164/15/1…
After chatting with @billdoesphysics, I have posted a topic to discuss the BTC. All input welcome! bit.ly/1sPdmdd
In the interests of eating our own dogfood, the BTC mission statement has been moved to github: github.com/BioTest/core/
Some movement in the right direction for open software in science from Nature nature.com/news/code-shar…
If you're new to bioinformatics and looking where to learn more, you could do much, much worse than start with this: ploscompbiol.org/article/info%3…
#PLOSCompBio: Bioinformatics Curriculum Guidelines: Toward a Definition of Core Competencies dx.plos.org/10.1371/journa…
Currently writing a grant proposal to raise the capital to get the infrastructure of the BTC off the ground. Send us your feature requests!
Sorry Dr. Peng, code review isn't there to make it pretty, it's there to make it *work* nature.com/news/mozilla-p…
Parametrized unit testing in R r-bloggers.com/a-technique-fo…
Two interesting papers regarding software peer-review in science: sciencemag.org/content/340/61… and sciencemag.org/content/341/61…
Thanks to @iddux for drawing attention to this important issue! Centralized resources for lab self-policing is 1st step bytesizebio.net/index.php/2012…
Thanks to Tim Booth at NEBC for the discussion this morning and for supporting the BTC! nebc.nerc.ac.uk
Good software comes from good testing. Good testing comes from good design. Good design is facilitated by UML: uml.org
Slides from presentation at #bosc2012 are now up on slideshare: slideshare.net/btemperton/bio…
@etalevich Rating system on the cards for the near future. First will establish simpler reproducibility requirement to get buy-in from devs
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