Jiqing Wu @IID_learning
Postdoc @UniSpital_USZ Joined March 2022-
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🔊A novel study 'Tera-MIND: Tera-scale mouse brain simulation via spatial mRNA-guided diffusion'! Using spatial mRNA as input, we generated tera-scale 3D 🐭 brain. Web: shorturl.at/Ze2QP Code: shorturl.at/DM7Kd Paper: shorturl.at/c8bJW #GenAI #diffusion
Excited for the upcoming @midl_conference at #Paris 🇫🇷 ! Welcome to our *oral* presentation "Infinite spatial transcriptomic editing in a generated gigapixel 🐭"! Github: github.com/CTPLab/IST-edi… Program: Oral 2.3 - Synthesis Time: Thursday from 16:30-16:45
🎇For the first time ever, we propose Infinite #SpatialTranscriptomic editing using #GenerativeAI. Our approach enables algorithmic gene expression-guided editing in a generated gigapixel mouse pup🐭. Code, preprint and generated 106496 x 53248 WSIs: github.com/CTPLab/IST-edi…
Age is an independent prognostic and causal risk factor for worse outcome after curative tx for stage I-III endometrial cancer pts. A multi-method study using data of the PORTEC -1/2/3 trials by Famke Wakkerman. Presented at #ESTRO24 by prof Creutzberg thelancet.com/journals/lanon…
Older women with #endometrialcancer should not be excluded from (molecular) diagnostic assessments and treatment based on their age alone. Read in our Lancet Oncology paper why: Prognostic impact and causality of age on oncological outcomes in wome... sciencedirect.com/science/articl…
@AdrianoAguzzi Hope you recover soon, Dr. Aguzzi.
Prognostic impact and causality of age on oncological outcomes in women with endometrial cancer: a multimethod analysis of the randomised PORTEC-1, -2 and -3 trials medrxiv.org/cgi/content/sh… #medRxiv
Since the regular paper #reviews+decisions for @midl_conference 2024 in Paris are now out (and publicly accessible), I did a brief analysis of the data using the OpenReview API. ➡️ deepmicroscopy.org/midl-2024-an-u… ⬅️
one important reason we haven't reached an "alphafold moment" for biological data beyond protein structures: datasets for protein structure are consistent and uniform. x-ray crystallography or cryo-EM data provide absolute atomic coordinates, meaning that the data is standardized and directly comparable across different experiments and studies. datasets in other areas, such as RNA-seq or cell painting, suffer from batch effects and differences in normalization strategies, making it challenging to aggregate and harmonize data across labs at sufficient scale to achieve alphafold-level capabilities. big reason why data standardization initiatives like @czbiohub are so important to computational biology.
This SST-editing study was developed upon advanced spatial transcriptomic platforms #CosMx (@nanostringtech) and #Xenium(@10xGenomics) Many thanks to the researchers for curating the data! Many thanks to @ViktorKoelzer for supervising the project!
Can we simulate tumor->normal cell transition using gene expression? SST-editing (@OUPBioinfo) enables in silico gene expression-guided editing at single-cell resolution. #GAN #GenAI Accepted paper doi.org/10.1093/bioinf… Code github.com/CTPLab/SST-edi… Liver tumor->normal cells
Can we simulate tumor->normal cell transition using gene expression? SST-editing (@OUPBioinfo) enables in silico gene expression-guided editing at single-cell resolution. #GAN #GenAI Accepted paper doi.org/10.1093/bioinf… Code github.com/CTPLab/SST-edi… Liver tumor->normal cells
IST-editing: Infinite spatial transcriptomic editing in a generated gigapixel mouse pup biorxiv.org/cgi/content/sh… #biorxiv_bioinfo
🎇For the first time ever, we propose Infinite #SpatialTranscriptomic editing using #GenerativeAI. Our approach enables algorithmic gene expression-guided editing in a generated gigapixel mouse pup🐭. Code, preprint and generated 106496 x 53248 WSIs: github.com/CTPLab/IST-edi…
Can low grade endometrial cancer be p53 abnormal? Does the p53abn status matter for prognosis? Largest & most comprehensive study now in CCR: Clinical Behavior and Molecular Landscape of Stage I p53-abnormal Low-Grade Endometrioid Endometrial Carcinomas aacrjournals.org/clincancerres/…
Using #CRISPR engineering, researchers in @ScienceTM have manufactured hypoimmune pancreatic islet transplants that can control #diabetes in mice while avoiding destruction by immune cells, removing the need for immunosuppressive drugs. scim.ag/2lO
GPT-4 does drug discovery. Give it a currently available drug and it can: - Find compounds with similar properties - Modify them to make sure they're not patented - Purchase them from a supplier (even including sending an email with a purchase order)
No. Tesla recall, MSFT Bing fail, and Google Bard fail are NOT independent; each reflect the fact that you cannot build AI in the real world from Big Data and deep learning alone. Too many edge cases and not enough reasoning. We need new approaches; current AI has been oversold.
@GaryMarcus Great idea - Let’s conflate several very different things together and call for the next AI winter. 👏🏼
Our 'LEA' pre-print study is released this week. we a. propose a robust quantification score (e.g., hit score for phenotypic drug screening) b. support the biologically plausible simulation of phenotypic changes. See github.com/CTPLab/LEA for more detail. #Covid #drug
How do we quantify #drug effects (e.g. #COVID) on cell-based essays? Keywords: eigenvalue comparison. How do we explain the quantification? Demo: VERO cell population. Follow the project update via github.com/CTPLab/LEA, @ViktorKoelzer, @Unispital_USZ, @UZH_en
Li Zhongxiao @lzx_325
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Irene Yujnovsky @IYujnovsky
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Bruker Spatial Biolog... @brukerspatial
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William Cross @wchcross
393 Followers 423 Following Researcher in Cancer Genomics, Big Data, and Biomarker discovery. Lecturer in Bioinformatics, University of Reading
ingrid berg @ingridb84475383
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Pat Pataranutaporn @patpat_mit
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Roger @Equilibrium103
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Pedro T Ramirez @pedroramirezMD
3K Followers 2K Following Professor of Gynecologic Oncology and Chair of Obstetrics & Gynecology Houston Methodist Hospital. All tweets are my own.
RAINBO Research Conso... @RAINBOprogram
222 Followers 217 Following Official account of the RAINBO program of 4 clinical trials for women with endometrial cancer. Email: [email protected]
Nuit Blanche: A Techn... @NuitBlog
398 Followers 206 Following Defeating the curse of dimensionality one algorithm at a time. 7M+ pageviews so far..Also the Advanced Matrix Factorization Jungle page https://t.co/dpQgesm8SY
Yueru Li @liyueru2
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Stephanie Craig @StephGCraig
233 Followers 204 Following Lecturer in precision medicine @QubPGJCCR Research image analyst in molecular pathology @QubPMC
Richard Sutton @RichardSSutton
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Jiao Sun @sunjiao123sun_
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王局志安 @wangzhian8848
1.5M Followers 676 Following 调查记者，主持人。油管频道地址：https://t.co/WfO3vZ0ygY?amp=1，Facebook地址：https://t.co/QO4mprdzUL，TikTok地址：https://t.co/chl5sh7Cfa
Chris Poulios @Chris_PouliosMD
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Jerad Gardner, MD @JMGardnerMD
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MICCAI Society @MICCAI_Society
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Guido van Rossum @gvanrossum
308K Followers 480 Following Python's BDFL-emeritus, Distinguished Engineer at Microsoft, Computer History Fellow, fully vaccinated. Opinions are my own. He/him.
Joseph Paul Cohen @josephpaulcohen
1K Followers 559 Following CompSci + ML + Healthcare. @AWSCloud, @StanfordAIMI, @Mila_Quebec. Director of https://t.co/gYWXTejyJb, https://t.co/N7PzI3ikhU, and https://t.co/1DBZ8BiID8.
Yutong Bai @YutongBAI1002
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#CVPR2026 @CVPR
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Eoghan J Mulholland �... @EJ_Mulholland
802 Followers 513 Following Lee Placito Fellow of Gastrointestinal Cancer 👨🏻🎓 @UniofOxford 👨🏼🔬🎓 Oncology🔬 Precision Medicine 🧬 All genes expressed are my Eoghan
Broad Institute @broadinstitute
100K Followers 3K Following A multidisciplinary community of researchers on a mission to improve human health.
Valence Labs @valence_ai
6K Followers 31 Following Decoding biology to radically improve lives. Décrypter la biologie pour radicalement améliorer les vies. Powered by | Propulsé par @recursionpharma.
The Lancet @TheLancet
752K Followers 456 Following Welcome to The Lancet, one of the world’s leading medical journals, published weekly since 1823.
The Lancet Oncology @TheLancetOncol
61K Followers 418 Following The Lancet Oncology is the global leader in clinical oncology publishing peer-reviewed research and reviews, comment, news, and Commissions. IF=35·9.
medRxiv @medrxivpreprint
17K Followers 0 Following The non-profit preprint server for the health sciences
10x Genomics @10xGenomics
29K Followers 667 Following Enabling researchers to answer biology’s hardest and most elusive questions with innovative #singlecell, #spatialbiology & #insitu technology
Bruker Spatial Biolog... @brukerspatial
12K Followers 2K Following Bruker Spatial Biology provides best‑in‑class solutions for capturing the full complexity of biology through a portfolio of instruments, software, and services.
James Zou @james_y_zou
25K Followers 138 Following @Stanford professor. Chan-Zuckerberg investigator. Sloan Fellow. Overton Prize. @togethercompute. AI for science + health.
Kenneth D Harris @kennethd_harris
7K Followers 153 Following Neuroscientist at University College London
Andrew Pannu @andrewpannu
15K Followers 297 Following daily dose of biotech & healthcare commentary • founder @sleuthinsights • building software for the bioeconomy
Matteo Carandini @MatteoCarandini
8K Followers 60 Following Neuroscientist at UCL. My opinions. No longer tweeting. Moved to @[email protected] and https://t.co/cEI15ESd79
David S. Goodsell �... @dsgoodsell
24K Followers 109 Following ~molecular art | molecular science~ free digital files of my paintings at RCSB PDB: https://t.co/gJwOxh1GXU…
Thomas G. Dietterich @tdietterich
62K Followers 652 Following University Distinguished Professor (Emeritus), Oregon State Univ.; Former President, AAAI; Currently Chair CS Section of ArXiv
Philip Dunne @DrPipDunne
2K Followers 1K Following Molecular phenotyping in colorectal cancer. Reader in Belfast @QUBPGJCCR & Group Leader in Glasgow @CRUK_SI
Wenhu Chen @WenhuChen
26K Followers 800 Following Meta MSL. I led PoT, MMMU, MMLU-Pro, ClawBench, MAmmoTH, General-Reasoner, VL-Rethinker, VLM2Vec. I contributed to Gemini-2.5 and Muse Spark series.
Javier Santoyo @jsantoyo
6K Followers 899 Following Genomics & Bioinformatics Scientist #Omics #NGS #LongReads | Also @ https://t.co/TCJKash6C1 | Opinions my own. He/Him
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Stanford AI Lab @StanfordAILab
258K Followers 337 Following The Stanford Artificial Intelligence Laboratory (SAIL), a leading #AI lab since 1963. ⛵️🤖 Emmy-winning video: https://t.co/lV9smZTC1m
William Cross @wchcross
393 Followers 423 Following Researcher in Cancer Genomics, Big Data, and Biomarker discovery. Lecturer in Bioinformatics, University of Reading
Albert Vilella @AlbertVilella
24K Followers 23K Following Next-Generation Sequencing, Single-Cell and Spatial Biology, Next-Generation Proteomics, Synthetic Biology, Liquid Biopsy, Accelerated Compute in Biotech.
Institute of Tissue M... @igmp_unibern
211 Followers 80 Following This channel is no longer active. Still active: https://t.co/PkiWO07UM5 Instagram: igmp__universitaetbern YouTube@igmp_itmp
WikiResearch @WikiResearch
17K Followers 1K Following Research news on @Wikipedia @Wikidata @Wikimedia, hot off the press. Volunteer-curated by @tilmanbayer & @mad_astronaut. Read our newsletter for full coverage
不明白播客 @bumingbaipod
106K Followers 113 Following 不明白播客官方推特 Apple: https://t.co/mK0s6gAoyz Spotify: https://t.co/ZiCGaYNCWR YouTube: https://t.co/yUH081YKPB 捐赠链接：https://t.co/lfKUuexsUS
Li Yuan袁莉 @LiYuan6
140K Followers 2K Following NYT Asia tech columnist 不明白播客主持人 Views here are my own 联系请用li.yuan AT nytimes. com 或者 FreeFrom公匙npub1nc3azwxkfaj96n85sujpcvy5mmn72hm3rzxklqqaklmzrwlljrqsfgsyca
Damien Teney @DamienTeney
2K Followers 604 Following Research Scientist @ Idiap Research Institute. @Idiap_ch Adjunct lecturer @ Australian Institute for ML. @TheAIML Occasionally cycling across continents.
ingrid berg @ingridb84475383
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bioRxiv Bioinfo @biorxiv_bioinfo
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Cell Press @CellPressNews
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Percy Liang @percyliang
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Cell Reports @CellReports
149K Followers 142 Following Cell Reports is an open-access journal at Cell Press, publishing weekly. Tweets by Cell Reports editors.
Brookfield @Brookfield
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Molecular Cell @MolecularCell
149K Followers 517 Following Molecular Cell is a Cell Press journal that aims to publish the best papers in molecular biology.You might like
