Sebastian Triesch @SebTriesch
Biochemist | Düsseldorf | PhD Student @WeberLab_HHU @ceplas_1 Nordrhein-Westfalen, Deutschland Joined July 2016-
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Last one from my PhD @WeberLab_HHU! We show bundle sheath function in C3-C4 intermediate Moricandia by single-nuclei sequencing. Now off to new adventures at @WGGC_de
Single-nuclei sequencing of Moricandia arvensis reveals bundle sheath cell function in the photorespiratory shuttle of C3-C4 ... biorxiv.org/cgi/content/sh… #biorxiv_plants
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Sebastian Triesch retweeted
Single-nuclei sequencing of Moricandia arvensis reveals bundle sheath cell function in the photorespiratory shuttle of C3-C4 ... biorxiv.org/cgi/content/sh… #biorxiv_plants
#seb2024 @SEBiology was SO cool. Enjoyed Prague, met old friends and made new ones.
Sebastian Triesch retweeted
🚀 Exciting new research alert! Check out "Predmoter - Cross-species prediction of plant promoter and enhancer regions" 🌿. This deep learning tool predicts ATAC-seq and ChIP-seq read coverage from DNA sequences, reducing cost and time in plant genomics! Read more: doi.org/10.1093/bioadv… 📘 #Bioinformatics #PlantScience #Genomics #AI @SebTriesch @SchluterUrte
Sebastian Triesch retweeted
Peer-reviewed version finally out: Predmoter—cross-species prediction of plant promoter and enhancer regions academic.oup.com/bioinformatics…
Sebastian Triesch retweeted
A week left to apply! 🚨 I’m looking for a research technician to join us @OxfordBiology and to help set up an efficient transformation pipeline in the C4 species Gynandropsis. Come work with us on leaf anatomy and photosynthesis! 🌱🪴 Find out more 👇 my.corehr.com/pls/uoxrecruit…
Sebastian Triesch retweeted
Our paper on the dissection of three light-responsive plant enhancers is out: academic.oup.com/plcell/advance… My favorite finding: the enhancers rely on suboptimal transcription factor binding sites. This is consistent with the beautiful work on animal enhancers from @EKFarley
@jmugaldev @PlantScienceDBG @WeberLab_HHU Thanks José!
I‘m proud to have received the Reinhold von Sengbusch Award by @PlantScienceDBG at last week‘s #mbp2024 conference! Thanks to my group @WeberLab_HHU for your great input preparing my talk!
Sebastian Triesch retweeted
Great work @Pabster212! Investigating the cis-Regulatory Basis of C3 and C4 Photosynthesis in Grasses at Single-Cell Resolution biorxiv.org/content/10.110…
Sebastian Triesch retweeted
Transposable elements contribute to the establishment of the glycine shuttle in Brassicaceae species - Triesch - Plant Biology - Wiley Online Library onlinelibrary.wiley.com/doi/10.1111/pl… @SebTriesch @JBouvierPlants @Steve__Kelly @AlisandraDenton @SchluterUrte @vReichel_Deland
Finally out, our paper on #transposons and their role in C3-C4 intermediate photosynthesis! onlinelibrary.wiley.com/doi/10.1111/pl… Thanks to all involved! @WeberLab_HHU @apmweber @AlisandraDenton @vReichel_Deland @Steve__Kelly @JBouvierPlants
Sebastian Triesch retweeted
'Brassicaceae display variation in efficiency of photorespiratory carbon-recapturing mechanisms' - Urte Schlüter, Jacques W Bouvier, Ricardo Guerreiro, Milena Malisic, Carina Kontny, Philipp Westhoff, Benjamin Stich, @apmweber 🌿 bit.ly/3rc8pXK
Sebastian Triesch retweeted
I’m happy to share “Cooperativity and additivity in plant enhancers”, our newest paper out now on bioRxiv: biorxiv.org/content/10.110… We dissected three light-responsive plant enhancers and found evidence for cooperative and additive interactions between functional enhancer regions.
Sebastian Triesch retweeted
When you work on a bunch of weird non-model species this kind of prediction is everything! Predmoter - Cross-species prediction of plant promoter and enhancer regions biorxiv.org/content/10.110…
@Francois_Parcy @jaspar_db Yes, predmoter is perfect for this. It‘s fast, easy to use and it’s predictions correlated surprisingly well with TFBS predictions using @jaspar_db via fimo. Take some co-expression data in the loop and you can narrow down potentially binding TFs significantly.
Sebastian Triesch retweeted
#Predmoter deep neural network. input: genome sequence FASTA; output: prediction of ATAC- and Histone H3 trimethylated at lysine 4 (H3K4me3) ChIP-seq. Documentation/ download from: github.com/weberlab-hhu/P… @AlisandraDenton @SebTriesch @WeberLab_HHU @SchluterUrte @vReichel_Deland
Predmoter - Cross-species prediction of plant promoter and enhancer regions biorxiv.org/cgi/content/sh… #bioRxiv
Sebastian Triesch retweeted
Predmoter - Cross-species prediction of plant promoter and enhancer regions biorxiv.org/content/10.110…
Sebastian Triesch retweeted
The identification of CREs with Predmoter with only DNA sequence as input! 🤓
Predmoter - Cross-species prediction of plant promoter and enhancer regions biorxiv.org/content/10.110…
You want to have cool ATAC and ChIP-seq data for your favorite plant genome but you don’t like pipetting? Check out Predmoter, our DL tool predicting open chromatin! (Yes, it works)
Predmoter - Cross-species prediction of plant promoter and enhancer regions biorxiv.org/cgi/content/sh… #biorxiv_bioinfo
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