-
Tweets55
-
Followers522
-
Following45
-
Likes93
@the_tessallator Amazing, thanks for this huge effort @SPeidli @the_tessallator!
Introducing scPerturb, a collection of 44 single cell perturbation datasets with unified annotations available at scperturb.org (1/5)
A bit late to the party, but excited to add summer interns to my team and appreciative of any help to spread the word. Benchmark: 2/2 previous summer interns with multiple job offers have since joined full time. The 3rd is censored (yet to graduate). linkedin.com/feed/update/ur…
Squidpy 🌌🍤🐍🎉 is out in @naturemethods ! Truly collab effort with @HannahSpitzer1 Michal Klein @fabian_theis lab! nature.com/articles/s4159…
More exciting news on this: our work has made the cover of @NatureBiotech. AI helps democratize to analyze single-cell data! It basically works like a google map navigator to navigate you through the map of cells to analyze your data!
(1/3)I am happy that scArches is finally out, this is how we think about the future of single-cell genomics, instead of analyzing every new data from scratch, harness the power of multi-omic reference atlases using transfer learning to transfer knowledge!
Honored that our scArches paper made cover @NatureBiotech! It allows you to project (or query) single cell expression data onto existing reference atlases without need for full data integration by leveraging transfer learning. nature.com/articles/s4158… github.com/theislab/scarc…
(1) Finally out, after one of the most painful and long reviews (with nitpicky reviews, see my last comment) is a method that I am extremely proud of and excited about. One of the best in my career: nature.com/articles/s4159…
Finally published in @naturemethods: CellRank for directed #SingleCell fate mapping, our take on studying cellular dynamics using RNA velocity. Fantastic collab between labs of @dana_peer @sloan_kettering and @fabian_theis @HelmholtzMunich, read at go.nature.com/3Fm17lt. 1/17
Chromatin Velocity reveals epigenetic dynamics by single-cell profiling of heterochromatin and euchromatin go.nature.com/3mLPL2y
Very happy that our transfer learning approach for single cell genomics is out @NatureBiotech! Led by @MohammadLotfol1, scArches allows querying & mapping own data on reference atlases without reintegrating or sharing original data. go.nature.com/3kzaSnT github.com/theislab/scarc…
Finally, we describe possible extensions to account for more complex kinetics, stochasticity, gene regulation, multivariate, and omics readouts. doi.org/10.15252/msb.2…
Simulations and a small mathematical exposition show how time-dependent rates shape curvature patterns.
Perspectives in RNA velocity! Great insights on this intriguing concept from most fruitful discussions wrapped into a manuscript on **current challenges and future perspectives**, with @_ruslansoldatov, @KharchenkoLab and @fabian_theis. Check out doi.org/10.15252/msb.2….
Stunning talk by Özlem Türeci @BioNTech_Group at our @HelmholtzMunich townhall meeting, describing their #covid19 vaccine development in only 10 months, now administered to 260M people - what a success story!
In partnership w/ @fabian_theis of @HelmholtzMunich, we’ve built & open sourced #AI that will accelerate discovery of new drug combinations. ai.facebook.com/blog/ai-predic…
(1/6) Just released: CellRank 1.3 (bit.ly/31wgMgt) works beyond RNA velocity by introducing new ways to compute transition matrices and methods to visualize them. Our new external module encourages community engagement and new tutorials make it easier to get started.
Cellarity raised $123M Series B financing to drive a new approach to #drugdiscovery targeting the cell. Our blend of expertise across systems biology, high-res data, and #machinelearning is uncovering treatments for patients. #cellbehavior #singlecell #ai bit.ly/2ZMhyoE
Fabian Theis @fabian_theis
38K Followers 430 Following Computational biologist @HelmholtzMunich, prof @TU_Muenchen & associate PI @sangerinstitute. Dad of 4 and mountain lover. Department news, see @CompHealthMuc
Anshul Kundaje @anshulkundaje
32K Followers 3K Following Federally funded academic research is the innovation engine of the US economy. Reform is welcome. Destruction will have long term consequences.
Single Cell Omics Ger... @singlecellomics
5K Followers 590 Following Connecting researchers using & developing single cell technologies. Providing a collaborative platform, organizing workshops & hackathons, exchanging expertise.
Lukas Heumos @LukasHeumos
914 Followers 687 Following Sr Solution Architect Genomics @nvidia | Steering council @scverse_team | Postdoc at @fabian_theis lab Personal account - do not represent employer NVIDIA.
Ramon Massoni Badosa @rmassonix
3K Followers 2K Following Postdoc @nygenome @WeillCornell in love with single-cell multiomics, immunology, hematology, data science. I care about open science and education
David Fischer @davidsebfischer
2K Followers 1K Following I develop mechanistic machine learning tools for single-cell and spatial omics data to understand the regulatory patterns underlying human disease dynamics.
Vitalii Kleshchevniko... @vitaliikl
2K Followers 1K Following Researcher @bayraktar_lab @StatGenomics @teichlab @sangerinstitute | Physics & AI to study cells, cell circuits & brains 🧠 | #SingleCell+spatial | 🌍🇺🇦to🇬🇧
Nils Blüthgen @molsysbio
705 Followers 683 Following Computational Modelling in Medicine @IRILifeSciences @ChariteBerlin @HumboldtUni @[email protected]
Helmholtz Munich PhD ... @Health_talents
2K Followers 768 Following We attract, train and support passionate early-career scientists @HelmholtzMunich for outstanding careers in research & beyond. Impressum: https://t.co/Ywz31VgMpN
Malte Luecken @MDLuecken
2K Followers 645 Following Luckylab, Computational Biologist, Data integrator, Human Cell Atlasser, Single cell, Lung, Floorballer
evo-devo @Xiaojie_Qiu
5K Followers 2K Following Assistant Prof. @ Stanford BASE, Genetics & CS (courtesy). Lead the predictive genomics lab. Come to work with us to build the first AI virtual embryo model!
Ruslan Soldatov @_ruslansoldatov
403 Followers 302 Following Computational biologist, Assistant member @MSKCancerCenter
Davide Cittaro @daweonline
2K Followers 2K Following Bioinformartist @ Center for Omics Sciences at OSR, Milan @CosrLab | Assistant professor @MyUniSR | Acusmatician
Arash Bagherabadi @arash_b_abadi
139 Followers 802 Following PhD student @UABImmunology | Single-cell & Spatial Transcriptomics | Immunology and Cancer | Goes by Arash B. Abadi | https://t.co/uZ44VCBNxb
Mike_Tawdarous @MTawdarous
28 Followers 447 Following
Carlos Soares @CarlosS56559284
3 Followers 110 Following
Xufeng Chen @xfchen0912
31 Followers 652 Following
Yuan Gao @gaoy0211
8 Followers 35 Following
Shuguang Wang @SScottWang
10 Followers 136 Following Ph.D. Candidate in Bioinformatics | Single-cell Multi-omics
Sherine @Sherine_ks
16 Followers 276 Following
ChillHail @ChouHce
13 Followers 645 Following
Dima Kalupin @DimaKalupin
208 Followers 2K Following https://t.co/r6VlYHCDtQ Ex: founder@friday, founder@friendzone; cmo@crypto exchange, cmo@digital forensics, quant@hft, engi@oracle. Math, strategy, ai, music
Debora Gisch @DeboraGisch
277 Followers 1K Following Clinical Pharmacology at @IUMedSchool #scRNA #scATAC #DNAmethylation
JCP @jcpllr
0 Followers 48 Following
Muhammad Anwar @Muhamma81966391
327 Followers 3K Following Graphs Graphon. DL Researcher, ex-proteinea AI, mathxBio AI expert/lead @ e&
Kexing Li @KexingLi1
16 Followers 87 Following BioSci/Stat undergraduate student at Tsinghua University. Incoming PhD student at Yale CBB.
ZhenDiao Zhou @zzddsg1
8 Followers 496 Following
Jaspreet Thind @jssprrt
177 Followers 535 Following Graduate Student of Computational Biology at @tamu
Yuzhe Li @dzg1854738
8 Followers 285 Following Computational Biology PhD, Deep learning, Single Cell Analysis, postdoc in Qiangfeng cliff Zhang lab, @ Tsinghua university
Pablo Monteagudo @pablommesas
39 Followers 306 Following
Ethan Weinberger @efweinberger
214 Followers 380 Following Machine learning for biology @UWCSE @suinleelab. @NSF GRFP fellow. Previously @yale
杨巍 @vicky_yangsun
0 Followers 4 Following
Chen Xiaoman @BacoorChicser
184 Followers 487 Following I am a multidisciplinary professional based in Vancouver with over 4 years of experience working in dual creative and project management roles
. @tissueso
146 Followers 6K Following
Ziyuan Zhao @zhaoziyuan2000
11 Followers 103 Following PhD at @harvard. Studying cell organization in TB and cancer at @harvard_lab. Unconventional AI4bio.
Marwan Sharawy @marwanm87763212
114 Followers 1K Following PhD student in the Human Evolutionary Genetics Unit at the @institutpasteur
Jo Graesslin @JoGraesslin
2 Followers 32 Following
Michael Rade @michaelrade010
2 Followers 228 Following
Meriem Bensouda, Ph.D... @BensoudaMeriem
387 Followers 1K Following Founding scientist @valinordiscover, ex @altos_labs PhD @ENS_ULM | AI, data, and biology to accelerate drug discovery for patients.
Pfleger philippe @Annemonika200
204 Followers 1K Following
Sofya Marchenko @SofyaMa
47 Followers 126 Following PhD student @chariteberlin @CompCancerRTG single-cell omics and other #bioinformatics thingys
Alessandro Palma @ale__palmaa
249 Followers 400 Following PhD student at @HelmholtzMunich and @TU_Muenchen | ML and computational biology
Artur Szałata @arturszalata
976 Followers 5K Following Research Scientist (ML) @IsomorphicLabs | prev. @fabian_theis lab @genentech @Novartis, MSc @EPFL_en. Opinions stated here are my own.
Models, Inference & A... @MIA_at_Broad
527 Followers 255 Following MIA supports learning and collaboration across the interface of biology and medicine with mathematics, statistics, machine learning, and computer science.
Aleks Goeva @AleksGoeva
267 Followers 592 Following Show me your neighbors and I'll tell you who you are - the single cell transcriptomics edition. Statistician, postdoc @broadinstitute, @MIA_at_Broad, @TheHDSR
Tessa Green @the_tessallator
1K Followers 2K Following computational immunology and AI @KiraGenBio | formerly @MIT @harvardmed and @hgsuuaw healthcare | she/her 🏳️🌈👩💻
Quentin Fort @fort_quentin
0 Followers 12 Following
Mayra Ruiz @mayra__ruiz_
129 Followers 416 Following #compbio postdoctoral fellow @vanvanka123 Institute of Computational Genomics @RWTH Aachen / shapes and spatial patterns at the gene expression level
Ken Chen @chenkenbio
31 Followers 530 Following Machine learning and computational biology. Postdoc @uchicago
Yash Raj @yraj__
157 Followers 255 Following I like to train neural nets that understand biology - MLxBio @CellDynamics @IndianaUniv @MIT_Manipal. Interested in AI, Genetics, Space.
Helenmark2241 @helenmark2241
2 Followers 56 Following
Kimmy @she_a_scientist
4 Followers 318 Following
Francesco Mazziotta @francemazz1
59 Followers 265 Following MD PhD, main interests: immunology, flow-cytometry, scRNAseq, computational biology. Fred Hutchinson Cancer Center
Yuanyuan Zhang @ZhangYY_Bio
7 Followers 128 Following
Markus Ekvall @EkvallMarkus
11 Followers 170 Following
Fabian Theis @fabian_theis
38K Followers 430 Following Computational biologist @HelmholtzMunich, prof @TU_Muenchen & associate PI @sangerinstitute. Dad of 4 and mountain lover. Department news, see @CompHealthMuc
Mo Lotfollahi @mo_lotfollahi
13K Followers 1K Following ML for biology and drug discovery | Faculty @sangerinstitute @Cambridge_uni
dana_peer @dana_peer
15K Followers 166 Following
antisense. @razoralign
17K Followers 69 Following Between language and causality, ephemeral echoes trace the edge of consciousness— intelligence is a transient footprints. https://t.co/5L9IhaBcRx
Michael Love @mikelove
16K Followers 4K Following Associate Professor of Genetics and Biostatistics at UNC
Single Cell Omics Ger... @singlecellomics
5K Followers 590 Following Connecting researchers using & developing single cell technologies. Providing a collaborative platform, organizing workshops & hackathons, exchanging expertise.
Nature Biotechnology @NatureBiotech
325K Followers 3K Following Publishing the best of biotech science and business. Find us on Bluesky, Facebook & Instagram. Part of @SpringerNature and @NaturePortfolio.
Sten Linnarsson @slinnarsson
9K Followers 295 Following Professor of Molecular Systems Biology at Karolinska Institutet. Moved to https://t.co/RutSid6fAz
scverse @scverse_team
4K Followers 0 Following Foundational tools for omics data (mostly in python) Join us at Bluesky: https://t.co/ziA75N5PZp
David Fischer @davidsebfischer
2K Followers 1K Following I develop mechanistic machine learning tools for single-cell and spatial omics data to understand the regulatory patterns underlying human disease dynamics.
Computational Health ... @CompHealthMuc
3K Followers 95 Following Comp scientists 👩🏽💻🧑🏻💻who are passionate about developing novel tools ⚒️ powered by AI💡to accelerate discovery & translation💪🏼 https://t.co/s36zCIjnr4
Human Cell Atlas @humancellatlas
19K Followers 552 Following MISSION To create comprehensive reference maps of all human cells as a basis for both understanding human health and diagnosing, monitoring and treating disease
Malte Luecken @MDLuecken
2K Followers 645 Following Luckylab, Computational Biologist, Data integrator, Human Cell Atlasser, Single cell, Lung, Floorballer
Ruslan Soldatov @_ruslansoldatov
403 Followers 302 Following Computational biologist, Assistant member @MSKCancerCenter
Adam Grant @AdamMGrant
872K Followers 938 Following Organizational psychologist @Wharton. #1 NYT bestsellers: THINK AGAIN, HIDDEN POTENTIAL. Podcast: Re:Thinking. Former diver and magician.
Timothy Keller (1950-... @timkellernyc
499K Followers 108 Following My son @michaelkellers posts here on my behalf (see pinned note). Founder of @redeemernyc. Co-Founder of @redeemerctc and @tgc. Loved New York City.
Noubar Afeyan @NoubarAfeyan
14K Followers 248 Following Pioneering innovations for a better future for people & the planet. Founder & CEO @FlagshipPioneer, the life sciences co that founded @moderna_tx and many more.
Matthias Tschöp @MatthiasTschop
3K Followers 2K Following
Alexander van Oudenaa... @AlexandervanOu1
3K Followers 53 Following Biophysicist, single-cell method developer, stem cell enthusiast, guitarist.
Emmanuel Saliba @AE_Saliba
1K Followers 2K Following Professor University Würzburg @Uni_WUE | Group Leader @Helmholtz_HIRI | RNA biology | Single cell genomics | Infectious diseases | 🇪🇺 🇫🇷 | Vivons Curieux!
milsy @milindkam
3K Followers 5K Following building US manufacturing resilience at the intersection of water security and healthcare
Cellarity @cellaritybio
2K Followers 468 Following Founded by @FlagshipPioneer, Cellarity is developing medicines through an understanding of cell behaviors.
Umut Eser @Umut1Eser
1K Followers 1K Following co-founder & AI @weave_bio [email protected] https://t.co/PVRrav70Ka
Nikolaus Rajewsky @N_Rajewsky
3K Followers 0 Following trying to find out if twitter can improve life.
Broad Institute @broadinstitute
101K Followers 3K Following A multidisciplinary community of researchers on a mission to improve human health.
Jon Bloom @MorseCell
2K Followers 187 Following Sr Lecturer at MIT Math/ESG, data science & topology. ML @CellarityBio; Institute Scientist, @hailgenetics & MIA @BroadInstitute; math at MIT, Columbia, Harvard
Scott Kallgren👨... @scottkall
304 Followers 689 Following Bioinformagician @moderna_tx. Former: Shiny @PRoXe_models, PhD @Columbia, postdoc+ @HarvardDBMI. Science here, politics @kallpoli
carsten marr @MarrCarsten
641 Followers 127 Following Analyzing and modeling single cells in biomedical data
Dan Gomari @daniel_gomari
218 Followers 88 Following Founder/CEO @ Quinn (YC S22) — the AI Scientist for pharma R&D. Stanford postdoc.
Gioele La Manno @GioeleLaManno
3K Followers 2K Following Professor at @EPFL - Laboratory of Brain Development and Biological Data Science. Biologist loving math and computers.
Jan Hasenauer @JanHasenauer
542 Followers 276 Following Researcher in #sysbio and #compbio with focus on the #analysis of #CancerSignalling and #SingleCell data
Elyas Heidari @HeidariElyas
365 Followers 695 Following Interested in math, biology, and computation | Cancer explorer with @MoritzGerstung and @StatGenomics @dkfz | previously @sut @EMBL @ETH_BSSE @CRUK_CI
Marius Lange @MariusLange8
1K Followers 310 Following Postdoc between the @TreutleinLab @ETH_en and @dana_peer labs, developing ML tools for #singlecell genomics.
410 Gone @Mohsen__Np
116 Followers 235 Following
Olle Holmberg @holmberg_olle
32 Followers 82 Following I am a Ph.D. student at the machine learning group at the Institute of computational biology, Helmholtz Center Munich. My interests are developing machine learn
Leander @le_and_er
157 Followers 98 Following PhD student in Computational Biology / Machine Learning in the labs of Prof. Fabian Theis (Helmholtz Munich) and Prof. Elisabeth Binder (Max Planck Psychiatry)
Christoph Ogris @christoph_ogris
218 Followers 343 Following TeamLead @Boehringer , Computational Biology
PeterK @KharchenkoLab
4K Followers 39 Following Computational biologist. PI at Altos Labs. Formerly from the wonderful DBMI at the Harvard Medical School. Expressed thoughts and opinions are my own.
Alex Wolf @falexwolf
4K Followers 436 Following Open data infra for bio/AI. Previously created Scanpy & led build-up of Cellarity's compute platform. Updates: https://t.co/tPwWzhqzdlYou might like
