Shawn Levy @genomicslab

The downside of naming a Twitter account after your lab means you're stuck with that name even after you move the lab. Still doing genomics though. Joined December 2009

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Alex Cagan @ATJCagan

2 years ago

First evolving technologies session at #genomescienceUK

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Excited to share this analysis of @ElemBio’s data (and their new Cloudbreak chemistry). We see accuracy advantages in Element data, especially at 20x-30x coverages and in homopolymers and repeats. Longer sequening inserts can further improve recall through hard genome regions.

bioRxiv Bioinfo @biorxiv_bioinfo

3 years ago

Accurate human genome analysis with Element Avidity sequencing biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

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Shawn Levy @genomicslab

3 years ago

@GenomixKid @GenomeInABottle A comprehensive comparison study, in collaboration with Google, will be published on bioRxiv in mid-July. Here is a preview figure comparing AVITI with NovaSeq data. HG003 was selected as it's excluded from DeepVariant training. #Genomics #NGS #AVITI”

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Shawn Levy @genomicslab

3 years ago

@mason_lab @PacBio @GenomeInABottle Great to see some data on the Onso platform!! Looking forward to seeing how it looks beyond a single end read and hopefully release of the data. It's an impressive start for sure!

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Shawn Levy @genomicslab

4 years ago

@GenomixKid @illumina @UltimaGenomics @MGI_Technology The NovaSeqX is a $1000/day instrument (5 year life, reasonable guess at service). Genomes at 100Gb based on $2/Gb or is it 125Gb/genome based on spec page listing 128 genomes per run? Surprising inconsistency for Illumina.

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Shawn Levy @genomicslab

4 years ago

Random Ramblings: New Chapters and the Elements of Competition linkedin.com/pulse/new-chap… via @LinkedIn

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Shawn Levy @genomicslab

6 years ago

@coregenomics @manal_mehta @JoshWarburton2 @OmicsOmicsBlog @SanDiegOmics @JuliaKarow @MGI_BGI @illumina Sequencing costs are like cell phone plans and hotels. They rarely include everything. Ultimately don't think anyone will be disappointed as long as the cost details have transparency. @MGI_BGI aimed for that at AGBT.

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Shawn Levy @genomicslab

6 years ago

@manal_mehta @JoshWarburton2 @OmicsOmicsBlog @SanDiegOmics @coregenomics @JuliaKarow Two different statements: $525=discounted NovaSeq reagents per 30x genome (compare to $500/$100 T7/TX costs). $600 estimates T7 genome when equipment and other costs factored in (compare to $750 on NovaSeq). Original statements meant to provide context more than compare.