Eugene Katrukha 🇺🇦 @katpyxa
biophysics, cytoskeleton and self-disorganization katpyxa.info Utrecht, NL Joined September 2008-
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I decided to move to the 450nm atmospheric website, look for me there.
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Eugene Katrukha 🇺🇦 retweeted
What is the difference between a growing and shortening microtubule end? I thought I knew the answer until I started talking to @maxotubule and @KalutskiyMaksim. Turns out the key are protofilament clusters - check out our preprint for details biorxiv.org/content/10.110…
Eugene Katrukha 🇺🇦 retweeted
Have you ever analyzed a #microscope image before- even just a single one? Please take our survey on progress and places to still improve for image analysis software! #microscopy #imageanalysis #bioimageanalysis forum.image.sc/t/2024-image-a…
Eugene Katrukha 🇺🇦 retweeted
.@yuhao_han, Grünewald, @MarinaMikhaylo8 @HumboldtUni et al. use primary hippocampal cultures to demonstrate that neurons with axon-carrying–dendrite (AcD) morphology can develop independent of an in vivo environment. hubs.la/Q02WP-Fw0 @christlet #Neuroscience #Polarity
Eugene Katrukha 🇺🇦 retweeted
@christlet @ArrateMunoz @guijacquemet Pre-release bundles available at downloads.imagej.net/fiji/future/ – still working on fixing a few things, which is why I haven't pushed the option to update to all Fiji users yet.
Eugene Katrukha 🇺🇦 retweeted
Virtual I2K starts TOMORROW, Monday the 28th! 34 FREE sessions, 900+ registrants so far. Learn more about favorite #bioimageanalysistools or find your next fav! i2kconference.org/virtual Please also help our community improve by filling out our survey - forum.image.sc/t/2024-image-a…
@HenriquesLab @gomez_mariscal @Bruno_MSaraiva @IvanHCenalmor Get well, it is most important!
Eugene Katrukha 🇺🇦 retweeted
yes, i do public engagement (lost my poster in the train)
@lhinderling I laughed, since that happened to me a couple of times. I hope you are not down, the main point is that you hopefully will arrive ok. And now you can show a presentation with movies instead of a boring 2D sketch.☺️
@lhinderling Interdisciplinary collaborations incoming!
Eugene Katrukha 🇺🇦 retweeted
How diverse is protein localization to human primary cilia? Check our study revealing incredible cell-type and single-cell diversity: biorxiv.org/content/10.110… 3 year effort of studying 1935 proteins with imaging - 654 ciliary proteins pictured! Tweetorial by @Prof_Lundberg & ⬇️
I’m very excited to finally present something we’ve been working on for the past couple of years – a spatial proteome map of primary cilia, released in @ProteinAtlas today. Amazing teamwork led by @jn_hansen Check out our preprint doi.org/10.1101/2024.1…
Eugene Katrukha 🇺🇦 retweeted
Announcing CT Foundation, a new medical imaging embedding tool that accepts a computed tomography (CT) volume as input and returns a small, information-rich numerical embedding that can be used to rapidly train models. Learn more and try it out yourself → goo.gle/4dYkClf
Eugene Katrukha 🇺🇦 retweeted
Microscopy Nodes 2.0 is out! This includes a new channel interface and OME-Zarr support! 🔬🎉 youtube.com/watch?v=ybQcKE…
Eugene Katrukha 🇺🇦 retweeted
🚀 Thrilled to announce #inTRACKtive: a web-based tool for exploring massive cell-tracking datasets, no software installation required! Just open your browser and dive into terabytes of developmental biology data. We used it to build the virtual embryozoo.org of tracked embryonic development datasets 🐭🪰🪱🪲🐠, but you can also use it for your own data! 🔬 Preprint: biorxiv.org/content/10.110… Repository: github.com/royerlab/inTRA… This project was spear-headed by @TeunHuijben, together with engineers Andrew Sweet and @aganders3 from @cziscience @czbbiohub #CZBiohubSF #devbio #tracking #web #visualization 🧵1/n
Eugene Katrukha 🇺🇦 retweeted
2/ 🐠 Zebrahub-Multiome offers interactive data exploration via CZ #CellxGene and interactive figures powered by #Streamlit. Dive into the time-resolved and cell-type-specific complexities of chromatin accessibility and gene regulatory networks during zebrafish embryogenesis with unprecedented detail! zebrahub.sf.czbiohub.org/epigenomics #zebrahub #grn #devbio
Very pretty! And looks like just right dataset for #BigTrace analysis and visualization
I’m very excited to finally present something we’ve been working on for the past couple of years – a spatial proteome map of primary cilia, released in @ProteinAtlas today. Amazing teamwork led by @jn_hansen Check out our preprint doi.org/10.1101/2024.1…
@christlet @bio_physics No. Good addition, thank you. I saw the paper, but I was not convinced by the results shown in figures.
@bio_physics Ok, here is the last one :) Similar idea to Fourier space decomposition, only they use pre-trained networks to separate orientations and link back github.com/i-yliu/mtquant
@bio_physics there is also this tool (matlab) that focuses on resolving intersections accurately github.com/mkitti/Adaptiv…
@bio_physics And there is also TSOAX/SOAX 2D/3D +T, but in C, standalone lehigh.edu/~div206/soax/i…
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