Root Phenomics Team @rootphenomics

We advance root phenotyping that links form to function from basic to applied science focusing on carbon. @LarryMattYork leads @ORNL. Member opinions only rootbiologist.com Oak Ridge, TN Joined July 2016

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Federico Ariel @arg_epilab

5 years ago

We are launching an Arabidopsis root segmentation challenge based on our recent ChronoRoot system🌱! Join us at @cvppa2021 workshop during @ICCV_2021! For more info check👇 @RootBiologyNews @RootPapers @rootomics @rootphenomics @Rootstrapping @RootScientists @BleinThomas

Enzo Ferrante @enzoferrante

5 years ago

Do you have a segmentation method and want to benchmark it in a cool task? Join us for the first root 🌱 segmentation challenge for plant phenotyping organized at @cvppa2021 workshop during @ICCV_2021 ! Website --> sites.google.com/sinc.unl.edu.a…

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Root Phenomics Team @rootphenomics

5 years ago

@RYE_SUS Maybe @RhizoVision would be useful 🤔

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New Phytologist @NewPhyt

5 years ago

Functional phenomics and genetics of the root economics space in winter wheat using high‐throughput phenotyping of respiration and architecture @LarryMattYork @haichao_guo @habtamu_tamir @marcusdgriff @soilnwater @ASeethepalli @rootphenomics nph.onlinelibrary.wiley.com/doi/10.1111/np…

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Root Phenomics Team @rootphenomics

5 years ago

The lab is fully-vaccinated! We had our first in-person social event, an outside BBQ, since December, 2019. We enjoyed great company and great food. Still cautious in general, but was great to see everyone together. @ASeethepalli @haichao_guo @soilnwater @LarryMattYork

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Root Phenomics Team @rootphenomics

5 years ago

Thanks to lab member @soilnwater for scanning the wires and performing validation analysis for @RhizoVision - preprint describing the software and validation coming soon!

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Root Phenomics Team @rootphenomics

5 years ago

Did you ever wish there was a public image set based on scans of physical objects with known length, diameter, and volume for validating image analysis algorithms? Granted! This set was used to validate @RhizoVision Explorer and includes ground truth data doi.org/10.5281/zenodo…

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Root Phenomics Team @rootphenomics

6 years ago

An illustrated protocol, example R code, and example data output have been released detailing how to use @LICOR_ENV 850 gas analyzers (roughly $6,000) for high-throughput measures of root respiration and to process directories of output. #gasflux zenodo.org/record/4247873

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Dan Barber @DanBarber

6 years ago

A root system is the literal and figurative foundation of transforming our food system. sciencedaily.com/releases/2020/…

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Root Phenomics Team @rootphenomics

6 years ago

RhizoVision Explorer is the hub of the RhizoVision ecosystem, that includes open, affordable hardware already published, like RhizoVision Crown, and upcoming plans for blue paper or pouch phenotyping, agar plates, and rhizoboxes. Flexibility is a strength.

RhizoVision Explorer @RhizoVision

6 years ago

RhizoVision Explorer has a Whole root mode for analyzing intact roots, like root crowns for shovelomics or roots on agar, and compatible with our RhizoVision Crown hardware platform. Additional features include convex hull, width, depth, angles, and holes doi.org/10.5281/zenodo…

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Root Phenomics Team @rootphenomics

6 years ago

Marcus wrote a short post about how barcodes can be used for sample tracking and for ingesting data directly into R scripts. We process so many samples that his super organization has been key to successes. We try to scan barcodes as much as possible to limit errors.

Marcus Griffiths @marcusdgriff

6 years ago

@vabenedito @SonaliRoy_ @rootphenomics Thanks for your interest. I couldn't make a good response in a tweet length so I made a short blog post about a PlantID barcode system at bit.ly/3175RdK any other questions please let me know!

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Sonali Roy @SonaliRoy_

6 years ago

When in doubt do what @marcusdgriff does. Label samples with 1) Expt name 2)Experiment number 3)Genotype 4)Treatment 5)Replicate Numbers 5) Your name/Lab name @rootphenomics . Bonus- print individual QR codes to easily relate downstream information with the correct replicates.

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Root Phenomics Team @rootphenomics

6 years ago

@bhive01 @tdawry The truth is out there.

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Root Phenomics Team @rootphenomics

6 years ago

@KelleyDior Maybe @NobleCell_Image knows something?

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Larry M. York @LarryMattYork

6 years ago

Fresh preprint by @marcusdgriff @rootphenomics representing 4 years of work to develop a phenotyping method RhizoFlux for multiple ion nutrient uptake by roots to make new discoveries. Uptake rates are heritable, correlated among nutrients and respiration biorxiv.org/content/10.110…

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Kristin Fuoco (she/her) @kbombycillidae

6 years ago

If you’re woman with a PhD who teaches ecology at a college in Ohio with ties to PA, this message is for you: I met your dad while doing field work. He was going for 21 miles on his bike around the lake. Says he can still outsmart you when it comes to trees but not sedges

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James Schnable @szintri

6 years ago

Thrilled to see @Valiancy_miao's preprint out. Flexible and robust functional principal component analysis to map genes controlling differences in plant phenotypes change over time. doi.org/10.1101/2020.0…

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Saoirse Tracy @SaoirseT

7 years ago

I’m looking for somebody who would like to start a 3 year post-doc in Dublin, Ireland in collaboration with @KatieField4 and Urwin Group @ Leeds. They must have soil/plant/microbe experience, preferably has X-ray CT/computer science/ imaging skills. Who is out there? DM me please

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Root Phenomics Team @rootphenomics

7 years ago

Thanks to @marcusdgriff @haichao_guo @soilnwater @ASeethepalli for being the best phenomics group in the world. We have all the pieces in place for next level science in the new year

Larry M. York @LarryMattYork

7 years ago

Lab party tonight. I'm still getting used to leading a team of researchers but am extremely grateful to be working with such talented and kind people. Doesn't hurt that they can cook tasty dishes! We had a lot of fun with @spotitgame #everynoblestory